Guys, thanks for all the ideas. I feel the parenting idea sounds the most promising. The idea, again, is like having a stereo camera with 2 lenses, each about 6 inches apart from each other. My first pass is with the left lens, the second with the right. Then I put them both into final cut and make a side by side 3D movie.

I'll try the parenting idea later tonight and let you kow how it goes.

The image wolf369 posted was just turning the camera from it's original position creating an angle. 3D lenses must always be parallel just like our 2 eyes.