I've never played with layers, so this might be completely wrong. If so, I'm sorry for wasting your time.

With transparencies on objects, there are two settings; edge and falloff. I usually set these to zero, so that they don't appear. This looks like one of those settings needs changing. If I saw this on, say, a clothing item I wanted to apply trans maps to, the first place I'd go is there two settings.

Just a thought.

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