Ok, so at this point its fair to say something has gone wrong with your custom catergorisation with the figure metadata. My suggestion would be to Reimport meta data for the Genesis 3 female figure and over ride your custom metadata on the figure. Basically this should reset Genesis 3 Females metadata back to the actual product metadata.

1. From the Content Library - Use the top right drop and select Content Database Maintenance
2. Firstly make a backup of your current user data by selecting Export User Data - this will create a backup if something goes wrong and you can always get back to the current state.
3. Select Re-import Metadata.
4. UNSELECT everything at the top of the panel including User Data and All Products, then select only the Genesis 3 Female Starter Essentials as the picture below.
5. Also deselect User data overrides Product Data at the bottom.
6. Press Accept.

This process will re-import the Genesis 3 Females Metadata and overwrite the existing customisation that is in place. If you want to add customised categorisation after this I can show you how to do that also.

If this process works then Genesis 3 Female should now be visible in your Smart content under females.

Let me know how it goes.