I solve the problem with the hair. You have to flip the transparency map veritcally. I kept looking at the texture and the transmap and I knew they weren't coinciding. I finally rotated the color map around and when it was upside down, it matched the transmap, but it still didn't apply right. I opened photoshop and flipped the map verically and saved it to a new name, then I tried applying it and it worked! The attached pictures were of exporting a poser 5 scene as an obj file and then passing that file through grouper. I then applied the transmaps manually. (I also had to tell Vue where the color maps were while loading.)